- Black Liquor Gasification
- CLIPORE - Mistras climate policy research program
- DOM - Domestication of micro-organisms for non-conventional applications
- Energy efficient reduction of exhausts from vehicles
- ENTWINED - Environment and Trade
- FOOD 21 – sustainable food production
- Fuel cells in a sustainable society
- Greenchem - Speciality Chemicals from Renewable Resources
- HagmarksMISTRA - Management of seminatural grasslands – economics and ecology
- Heureka - Environmental decision support models for forest land
- Marine Paint
- MASE - Microbial Activity for a Sound Environment
- MistraPharma
- Mistra-SWECIA - Climate, Impacts and Adaptation
- PERSEA - Plasma-enhanced reaction systems for environment applications
- PlantComMistra
- ProEnviro
- Stockholm Resilience Centre
- Sustainable Investment
- Towards a Closed Steel Eco Cycle
- TransportMistra
- ÅSC - Ångström Solar Centre
- ASTA - International and national abatement strategies for transboundary air pollution
- Biosignal - pheromones and kairomones to control pest insects
- ByggMISTRA - Sustainable building
- COLDREM - Soil remediation in a cold climate
- FjällMISTRA - Sustainable management in the mountain region
- KAM - The ecocyclic pulp mill
- LUSTRA - Land use strategies to reduce greenhouse gas emissions
- MARE - Marine Research on Eutrophication - a Scientific Base for Cost-Effective Measures for the Baltic Sea
- Microbial antagonism against fungi
- MiMi - Mitigating the environmental impact of mining waste
- NewS - New strategy for risk management of chemicals
- RESE - Remote sensing for the environment
- Soundscape support to health
- SUCOZOMA - Sustainable coastal zone management
- SUFOR - Sustainable forestry in southern Sweden
- Sustainable urban water management
- SWECLIM - Swedish regional climate modelling programme
- VASTRA - Water management research programme
- Ways Ahead - Paths to sustainable development